Tuesday, August 23th

11h-12h30 – session 1

• 11:00-11:30 – Resource aggregation for task-based Cholesky Factorization on top of heterogeneous machines, Terry Cojean, Abdou Guermouche, Andra-Ecaterina Hugo, Raymond Namyst and Pierre-André Wacrenier
• 11:30-12:00 – Performance and Power-Aware Classification for Frequency Scaling of GPGPU Applications, João F. D. Guerreiro, Aleksandar Ilic, Nuno Roma and Pedro Tomás
• 12:00-12:30 – Task-based Conjugate Gradient: from multi-GPU towards heterogeneous architectures, Emmanuel Agullo, Luc Giraud, Abdou Guermouche, Stojce Nakov and Jean Roman

12:30-14:30 – Lunch Break

• 14:30-15:00 – Task-based sparse hybrid linear solver for distributed memory heterogeneous architectures, Emmanuel Agullo, Luc Giraud and Stojce Nakov
• 15:00:15:30 – Distributed In-GPU Data Cache for Document-Oriented Data Store via PCIe over 10Gbit Ethernet, Shin Morishima and Hiroki Matsutani
• 15:30-16:00 – A Data-Parallel ILUPACK for Sparse General and Symmetric Indefinite Linear Systems, José Ignacio Aliaga, Ernesto Dufrechou, Pablo Ezzatti and Enrique S. Quintana-Orti,

16h-16h30 – Coffee break

16h30 – 17h30 – Session 3

• 16:30-17:00 – Automatic Generation of OpenCL Code for ARM Architectures, Sergio Afonso, Alejandro Acosta and Francisco Almeida
• 17:00-17:30 – Workflow Performance Profiles: Development and Analysis, Dariusz Król, Rafael Ferreira Da Silva, Ewa Deelman and Vickie Lynch

• 8:30-9:00 – Performance Analysis and Optimization of SAMtools Sorting, Nathan T. Weeks and Glenn R. Luecke.
• 9:00-9:30 – Optimized Execution Strategies for Sequence Aligners on NUMA Architectures, Josefina Lenis and Miquel Angel Senar.
• 9:30-10:00 – High Performance Small RNA Detection with Pipelined Task Parallel Computation Model, Linqiang Ouyang and Jin H. Park.
• 10:00-10:30 – Improving Multiobjective Phylogenetic Searches by Using a Parallel Epsilon-Dominance Based Adaptation of the Firefly Algorithm, Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez.

10:30-11:00 – Coffee break

11:00-12:30 – SESSION 2: Cluster computing in Bioinformatics – Chair: Sergio Santander-Jiménez

• 11:00-11:30 – Seamless HPC Integration of Data-intensive KNIME Workflows via UNICORE, Richard Grunzke, Florian Jug, Bernd Schuller, René Jãkel, Eugene Myers and Wolfgang E. Nagel.
• 11:30-12:00 – Improving Bioinformatics Analysis of Large Sequence Datasets Parallelizing Tools for Population Genomics, Javier Navarro, Gonzalo Vera, Sebastián Ramos-Onsins and Porfidio Hernández.
• 12:00-12:30 – A Framework for Accessible Cluster-enabled Epistatic Analysis, Alex Upton, Johan Karlsson and Oswaldo Trelles.

12:30-14:00 – Lunch break

• 14:00-14:30 – Improving Memory Accesses for Heterogeneous Parallel Multi-objective Feature Selection on EEG Classification, Juan José Escobar, Julio Ortega, Jesús González and Miguel Damas.
• 14:30-15:00 – Architecture for the Execution of Tasks in Apache Spark in Heterogeneous Environments, Estefanía Serrano, Javier Garcia Blas, Jesus Carretero and Monica Abella.
• 15:00-15:30 – Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs, Daniel Jünger, Christian Hundt, Jorge González-Domínguez and Bertil Schmidt.
• 15:30-16:00 – A Data Partitioning Model for Highly Heterogeneous Systems, Siham Tabik, Gloria Ortega, Ester M. Garzón and D. Suárez.

16:00-16:30 – Coffee break

16:30-17:30 – SESSION 4: Multi-level parallelism in Bioinformatics – Chair: Sergio Santander-Jiménez

• 16:30-17:00 – Two-level Parallelism to Accelerate Multiple Genome Comparisons, Óscar Torreño Tirado and Oswaldo Trelles.
• 17:00-17:30 – Evaluation of Parallel Differential Evolution Implementations on MapReduce and Spark, Diego Teijeiro, Xoan C. Pardo, David R. Penas, Patricia Gonzalez, Julio R. Banga and Ramón Doallo.

8:45 – 10:30 – Session 1 – Chair: Josef Weidendorfer

• 8:45-9:30 – Keynote1 Unconventional Architectures with Reconfigurable Computing – Michaela Blott, Xilinx
• 9:30-10:00 – The ICARUS white paper: A scalable, energy-efficient, solar powered HPC center based on low power GPUs, Markus Geveler, Dirk Ribbrock, Hannes Ruelmann, Daniel Donner, Christoph Höppke, Daniel Tomaschewski and Stefan Turek
• 10:00-10:30 – Exploiting In-Memory Processing Capabilities for Density Functional Theory Applications, Paul F Baumeister, Thorsten Hater, Dirk Pleiter, Hans Boettiger, Thilo Maurer and José R Brunheroto

10:30-11:00 – Coffee break

11:00-12:30 – Session 2 – Chair: Jens Breitbart

• 11:00-11:30 – Theano-MPI: a Theano-based Distributed Training Framework, He Ma, Fei Mao and Graham Taylor
• 11:30-12:00 – Acceleration of Turbomachinery Steady Simulations on GPU, Mohamed Hassanine Aissa, Lasse Mueller, Tom Verstraete and Cornelis Vuik
• 12:00-12:30 – In-Cache Streaming: Morphable Infrastructure for Many-Core Processing Systems, Nuno Neves, Adrien Mussio, Fabien Gonçalves, Pedro Tomás and Nuno Roma

12:30-14:00 – Lunch break

• 14:00-14:30 – A low-cost energy-efficient Raspberry Pi cluster for data mining algorithms, João Saffran, Gabriel Garcia, Matheus A. Souza, Pedro H. Penna, Márcio Castro, Luís F. W. Góes and Henrique C. Freitas
• 14:30-15:00 – Are Low-Power SoCs Feasible for Heterogenous HPC Workloads?, Max Plauth and Andreas Polze
• 15:00-15:45 – Keynote 2 Hyperion – A polymorphous high-performance processor introducing novel out-of-order and loop acceleration techniques, Martin Vorbach, Hyperion Core Inc.

15:45-16:30 UCHPC16 Best Paper Award Ceremony & Closing, Josef Weidendorfer, Jens Breitbart

• 09:00-9:30 Opening: Stephen L. Scott.
• 09:30-10:00 On the Inherent Resilience of Integer Operations Laura Monroe, William Jones, Scott Lavigne, Claude Davis, Qiang Guan and Nathan Debardeleben
• 10:00-10:30 Mario Heene, Alfredo Parra Hinojosa, Dirk Pflüger and Hans-Joachim Bungartz. A Massively-Parallel, Fault-Tolerant Solver for Time-Dependent PDEs in High Dimensions

10:30-11:00 – Coffee Break

11:00-12:45 – Session 2

• 11:00-11:30 – Horseshoes and Hand Grenades: The Case for Approximate Coordination in Local Checkpointing Protocols, Patrick Widener, Kurt Ferreira and Scott Levy
• 11:30-12:00 – Pragma-controlled Source-to-Source Code Transformations for Robust Application Execution, Pedro Diniz, Chunhua Liao, Daniel Quinlan and Robert Lucas,
• 12:00-12:30 – A Cooperative Approach to Virtual Machine Based Fault Injection, Thomas Naughton, Christian Engelmann, Geoffroy Vallee, Ferrol Aderholdt and Stephen Scott

12:30-12:45 – Closing Stephen L. Scott

12:45-14:00 – Lunch

• Welcome, Vittorio Scarano, Gennaro Cordasco, Paul Richmond and Carmine Spagnuolo
• 14:00-14:30 – A Standardised Benchmark for Assessing the Performance of Fixed Radius Near Neighbours, Robert Chisholm, Paul Richmond, and Steve Maddock
• 14:30-15:00 – D-MASON on the Cloud: an Experience with Amazon Web Services, Michele Carillo, Gennaro Cordasco, Flavio Serrapica, Carmine Spagnuolo, Przemysaw Szufel, and Luca Vicidomini
• 15:00-15:30 – Load-Sharing Policies in Parallel Simulation of Agent-Based Demographic Models, Alessandro Pellegrini, Cristina Montañola-Sales, Francesco Quaglia and Josep Casanovas-Garcia
• 15:30-16:00 – Computational Considerations for a Global Human Well-being Simulation, Aaron Howell and Paul Brenner

16:00-16:30 – coffee break

16:30-17:30 – Session 2: Tutorial, Panel and Round Table

• Tutorial on D-Mason 3.0, Gennaro Cordasco
• Panel: Open Agent Benchmark Initiative for Parallel and Distributed Benchmarking Chair: Paul Richmond
• Round Table Chair: Vittorio Scarano

9.00-10.30 – Session 1 Invited Talk + Mobility Models, Chair: Dragi Kimovski

• 9:00-10:00 – Invited Talk, Carlo Mastroianni, ICAR; CNR, Institute of High Performance Computing of the Italian National Council, Cosenza, Italy
• 10:00-10:30 – TRACE: generating traces from mobility models for Distributed Virtual Environments, Emanuele Carlini, Alessandro Lulli and Laura Ricci

10.30-11.00 Coffee Break

11.00-12.30 Session 2: Smart Cities, Edges and Opportunistic Computing, Chair: Alexandru Iosup

• 11:00-11:30 – TallyNetworks: Protecting Your Private Opinions with Edge-centric computing, Marc Ruiz Rodriguez, Pedro Garcia Lopez, Marc Sanchez-Artigas, Marc Ruiz
• 11:30-12:00 – Misrouted Prophecy – On the Impact of Security Attacks on PROPHET , Raphael Bialon and Kalman Graffi
• 12:00-12:30 – Balancing Speedup and Accuracy in Smart City Parallel applications, Carlo Mastroianni, Eugenio Cesario and Andrea Giordano

12.30-14.30 Lunch

• 14:30-15:00 – Multi-objective Optimization Framework for VMI Distribution in Federated Cloud Repostories, Dragu Kimovski, Nichant Saurabh, Sandi Gec, Vlado Stankovsky and Radu Prodan
• 15:00-15:30 – Towards a Methodology to form Microservice from Monolithic Ones, Gabor Kecskemeti, Attila Kertesz, Attila Marosi
• 15:30-16:00 – VM Image Repository and Distribution Models for Federated Clouds: State of Art, Possible Directions and Open Issues, Nishant Saurabh, Dragi Kimovski, Simon Istermann, Radu Prodan

16.00 -16.30 Coffee Break

16.30 -17.30 Session 4: P2P, chair: Dragi Kimovski

• 16:30-17:00Adgt.js: a Web Application Framework for Peer-to-Peer Location-Based Services, Giacomo Brambilla, Michele Amoretti and Francesco Zanichelli
• 17:00 – Concluding Remarks and Best Paper Award

• 13:30-13:35 – Welcome speech and announcements
• 13:35-14:20 – Extreme-Scale Operating Systems, Rolf Riesen (keynote)

14:20-14:30 Short break

14:30-16:00 – Session 2

• 14:30-15:00 – Reducing Response Time with Preheated Caches, Mathias Gottschlag and Frank Bellosa
• 15:00-15:30 – Dealing with Layers of Obfuscation in pseudo-Uniform Memory Architectures, Randolf Rotta, Robert Kuban, Mark Simon Schöps and Jörg Nolte
• 15:30-16:00 – Exploring Task Parallelism for Heterogeneous Systems Using Multicore Task Management API, Suyang Zhu, Sunita Chandrasekaran, Peng Sun, Barbara Chapman, Marcus Winter and Tobias Schuele

16:00-16:30 – Coffee Break

16:30-17:30 – Session 3

• 16:30-17:00 – Viability of Virtual Machines in HPC, Jens Breitbart, Simon Pickartz, Josef Weidendorfer and Antonello Monti
• 17:00-17:30 – DBrew – A library for dynamic binary rewriting Josef Weidendorfer (invited talk)